Publications



2017

Razooky B.S.; Obermayer B.; O'May J.B.; Tarakhovsky A.
Viral infection identifies micropeptides differentially regulated in smORF-containing lncRNAs
Genes 8 (8): 206 (2017-08-21)



2016

Calviello L.; Mukherjee N.; Wyler E.; Zauber H.; Hirsekorn A.; Selbach M.; Landthaler M.; Obermayer B.; Ohler U.
Detecting actively translated open reading frames in ribosome profiling data
Nature Methods 13 (2): 165-170 (2016-02)



2015

Mackowiak S.D.; Zauber H.; Bielow C.; Thiel D.; Kutz K.; Calviello L.; Mastrobuoni G.; Rajewsky N.; Kempa S.; Selbach M.; Obermayer B.
Extensive identification and analysis of conserved small ORFs in animals
Genome Biology 16: 179 (2015-09-14)



2014

Obermayer B.; Levine E.
Inverse Ising inference with correlated samples
New Journal of Physics 16: 123017 (2014-12-08)



Obermayer B.; Rajewsky N.
Mixed messages: re-initiation factors regulate translation of animal mRNAs
Cell Research 24 (12): 1383-1384 (2014-12)



Obermayer B.; Levine E.
Exploring the miRNA regulatory network using evolutionary correlations
PLoS Computational Biology 10 (10): e1003860 (2014-10-09)



Bazzini A.A.; Johnstone T.G.; Christiano R.; Mackowiak S.D.; Obermayer B.; Fleming E.S.; Vejnar C.E.; Lee M.T.; Rajewsky N.; Walther T.C.; Giraldez A.J.
Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation
EMBO Journal 33 (9): 981-993 (2014-05-02)



Lang P.S.; Obermayer B.; Frey E.
Dynamics of a semiflexible polymer or polymer ring in shear flow
Physical Review E 89 (2): 022606 (2014-02-27)



2013

Ivica N.A.; Obermayer B.; Campbell G.W.; Rajamani S.; Gerland U.; Chen I.A.
The paradox of dual roles in the RNA world: resolving the conflict between stable folding and templating ability
Journal of Molecular Evolution 77 (3): 55-63 (2013-09)



Leu K.; Kervio E.; Obermayer B.; Turk-MacLeod R.M.; Yuan C.; Luevano J.M.; Chen E.; Gerland U.; Richert C.; Chen I.A.
Cascade of reduced speed and accuracy after errors in enzyme-free copying of nucleic acid sequences
Journal of the American Chemical Society 135 (1): 354-366 (2013-01-09)



2011

Leu K.; Obermayer B.; Rajamani S.; Gerland U.; Chen I.A.
The prebiotic evolutionary advantage of transferring genetic information from RNA to DNA
Nucleic Acids Research 39 (18): 8135-8147 (2011-10)



Obermayer B.; Krammer H.; Braun D.; Gerland U.
Emergence of information transmission in a prebiotic RNA reactor
Physical Review Letters 107 (1): 018101 (2011-07-01)



Thueroff F.; Obermayer B.; Frey E.
Longitudinal response of confined semiflexible polymers
Physical Review E 83 (2 Pt 1): 021802 (2011-02)



2010

Obermayer B.; Frey E.
Error thresholds for self- and cross-specific enzymatic replication
Journal of Theoretical Biology 267 (4): 653-662 (2010-12-21)



2009

Obermayer B.; Frey E.
Escalation of error catastrophe for enzymatic self-replicators
Europhysics Letters 88 (4): 48006 (2009-11)



Obermayer B.; Frey E.
Tension dynamics and viscoelasticity of extensible wormlike chains
Physical Review E 80 (4 Pt 1): 040801 (2009-10)



Obermayer B.; Moebius W.; Hallatschek O.; Frey E.; Kroy K.
Freely relaxing polymers remember how they were straightened
Physical Review E 79 (2 Pt 1): 021804 (2009-02)



2007

Obermayer B.; Hallatschek O.
Coupling of transverse and longitudinal response in stiff polymers
Physical Review Letters 99 (9): 098302 (2007-08-31)



Obermayer B.; Hallatschek O.; Frey E.; Kroy K.
Stretching dynamics of semiflexible polymers
European Physical Journal E 23 (4): 375-388 (2007-08)



2005

Kroy K.; Fischer S.; Obermayer B.
The shape of barchan dunes
Journal Of Physics: Condensed Matter 17 (14): S1229-S1235 (2005-04-13)



2003

Carlson E.D.; Hirsch W.H.; Obermayer B.; Anderson P.R.; Groves P.B.
Stress-energy tensor for a massless spin 1/2 field in static black hole spacetimes
Physical Review Letters 91 (5): 051301 (2003-08-01)